![]() ![]() The PATH_TO_LOCAL_STORAGE_DIRECTORY should be replaced with the local directlry docker run -v PATH_TO_LOCAL_STORAGE_DIRECTORY:/data \ The next command assumes that docker is running. With that background in place, by starting a docker container from bioconductor_full, we canīuild binary packages that can be shared with others who are also running using bioconductor_full. The package will be installed as a subdirectory of location, and the package binary will be created in the current directory. ![]() Where location is the chosen directory with write access. The usage is then R CMD INSTALL -l location -build pkg To prevent changes to the present working installation or to provide an install location with write access, create a suitably located directory with write access and use the -l option to build the package in the chosen location. ![]() The default library tree must have write permission if not, the package will not install and the binary will not be created. If the installation is successful, it will overwrite any existing installation of the same package. R CMD INSTALL -build operates by first installing the package and then packing the installed binaries into the appropriate binary package file for the particular platform.īy default, R CMD INSTALL -build will attempt to install the package into the default library tree for the local installation of R. tar.gz format) or the location of the directory of the package source to be built. ![]() R CMD INSTALL -build pkg where pkg is either the name of a source tarball (in the usual. The recommended method of building binary packages is to use Nearly all bioconductor packages to be installed, as the underlying system dependenciesĪre all included. Levi Waldron and Nitesh Turaga to produce the bioconductor_full docker image will allow for Version, compiler, etc., we could use binary packages in linux as well.ĭocker provides just such a shareable and identical environment for linux. If, however, one had an identical set of installed libraries, kernel One of the challenges of producing a performant build environment for linux, such as what mightīe used to have developers test software in identical environments, is the need to compile ![]()
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